Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005591.1 Corchorus capsularis cultivar CVL-1 contig05609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13265

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--113
33
2.7
33
89
3
124
11
31
39
17
1.85
119--160
14
2.7
15
82
14
50
54
2
26
16
1.54
562--608
21
2.1
23
84
7
62
40
42
12
4
1.63
944--1202
41
6.3
41
88
2
360
14
27
19
38
1.90
1210--1731
49
10.7
49
83
4
558
22
28
16
32
1.96
1210--1731
147
3.6
145
83
5
633
22
28
16
32
1.96
4878--4923
24
1.9
24
81
0
56
32
23
8
34
1.86
6558--6583
13
2.0
13
100
0
52
30
15
38
15
1.88
7461--7524
32
2.0
31
88
8
94
35
15
3
45
1.62
7662--7757
38
2.6
37
82
9
131
13
17
11
57
1.65
8576--8901
164
2.0
164
82
7
403
37
9
8
43
1.69
9128--9306
22
8.0
21
73
9
133
35
10
17
36
1.84
9128--10129
44
22.8
42
66
20
271
38
9
16
35
1.82
9338--9467
22
5.9
20
74
13
80
33
9
20
36
1.84
9530--9668
22
6.2
22
72
16
99
38
11
15
33
1.84
9566--9732
22
7.6
22
76
6
135
40
10
14
34
1.80
9805--9889
42
2.0
42
84
4
109
37
4
16
41
1.69
9809--10396
22
27.0
22
70
12
223
38
9
15
36
1.79
10004--10083
23
3.5
23
89
1
108
42
6
12
38
1.68
10149--10256
45
2.4
45
80
8
114
32
10
17
39
1.83
11834--11873
18
2.2
18
90
0
62
42
17
20
20
1.89

Tables:   1

The End!