Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005600.1 Corchorus capsularis cultivar CVL-1 contig05618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7322
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:348 original size:15 final size:15

Alignment explanation


    Indices: 306--351  Score: 51
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        296 TTTATTTTTA

                         *  
        306 ATTAATTAATTTCCTT
          1 ATTAATTAATTT-ATT

                   *       
        322 A-T-ATTTATTTATT
          1 ATTAATTAATTTATT

                           
        335 ATTAATTAATTTATT
          1 ATTAATTAATTTATT

              
        350 AT
          1 AT

        352 CATAAAATAC


Statistics
Matches: 25,  Mismatches: 3, Indels: 5
        0.76            0.09        0.15

Matches are distributed among these distances:
  13    3  0.12
  14    8  0.32
  15   13  0.52
  16    1  0.04

ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61


Consensus pattern (15 bp):   
ATTAATTAATTTATT
Done.