Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005606.1 Corchorus capsularis cultivar CVL-1 contig05624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2606

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--594
38
11.1
38
91
3
619
49
6
17
26
1.70
191--594
149
2.7
149
96
1
727
49
6
17
27
1.70
191--672
187
2.6
185
87
6
684
48
6
18
26
1.73
689--763
32
2.3
33
93
2
125
57
4
16
22
1.55
1015--1114
14
7.3
13
71
17
69
54
7
19
20
1.67
1176--1227
25
2.0
25
85
3
68
55
1
19
23
1.53
1110--1280
42
4.0
43
77
13
158
47
4
23
25
1.69
1250--1302
16
3.2
16
73
5
52
50
5
18
24
1.68
1310--1340
15
2.1
15
93
0
53
64
0
16
19
1.29

Tables:   1

The End!