Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005618.1 Corchorus capsularis cultivar CVL-1 contig05636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1827
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:604 original size:8 final size:8

Alignment explanation


    Indices: 591--624  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        581 CACCTTCTTG

                    
        591 AAAAATTC
          1 AAAAATTC

                    
        599 AAAAATTC
          1 AAAAATTC

                 *   
        607 AGAAACTTC
          1 A-AAAATTC

                    
        616 AAAAATTC
          1 AAAAATTC

             
        624 A
          1 A

        625 TAGCCGATTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC

Found at i:715 original size:5 final size:5

Alignment explanation


    Indices: 698--731  Score: 52
    Period size: 5  Copynumber: 6.8  Consensus size: 5

        688 GTTATATCGA

                                                     
        698 AAAAT ATAAAT AAAAT AAAAT AAAAT AAAA- AAAA
          1 AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AAAA

        732 GTTTCGACCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   4    4  0.14
   5   19  0.68
   6    5  0.18

ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18


Consensus pattern (5 bp):   
AAAAT

Done.