Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005619.1 Corchorus capsularis cultivar CVL-1 contig05637, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3082
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:1932 original size:20 final size:21

Alignment explanation


    Indices: 1907--1953  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1897 GCACTGCAGT

                                  
       1907 ACATGGGTCG-CAAGCA-AGCC
          1 ACATGGGTCGCCAAGCATA-CC

                                 
       1927 ACATGGGTCGCCAAGCATACC
          1 ACATGGGTCGCCAAGCATACC

                  
       1948 ACATGG
          1 ACATGG

       1954 ACGCCCAGCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  20   10  0.40
  21   14  0.56
  22    1  0.04

ACGTcount: A:0.30, C:0.30, G:0.28, T:0.13


Consensus pattern (21 bp):   
ACATGGGTCGCCAAGCATACC

Done.