Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000562.1 Corchorus capsularis cultivar CVL-1 contig00562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2931
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34


Found at i:996 original size:15 final size:15

Alignment explanation


    Indices: 978--1010  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        968 GAGGCCACTT

                           
        978 AAAATCATGTGAATA
          1 AAAATCATGTGAATA

                           
        993 AAAATCATGTGAATA
          1 AAAATCATGTGAATA

               
       1008 AAA
          1 AAA

       1011 TTAAAATCAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24


Consensus pattern (15 bp):   
AAAATCATGTGAATA

Found at i:1612 original size:20 final size:20

Alignment explanation


    Indices: 1574--1612  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1564 TGGCTTTCAA

                          *     
       1574 GTTATCATTTATGAGTTTTG
          1 GTTATCATTTATGAATTTTG

                                
       1594 GTTATTCATTTA-GAATTTT
          1 GTTA-TCATTTATGAATTTT

       1613 TTTTTTTTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20   10  0.59
  21    7  0.41

ACGTcount: A:0.23, C:0.05, G:0.15, T:0.56


Consensus pattern (20 bp):   
GTTATCATTTATGAATTTTG
Done.