Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005636.1 Corchorus capsularis cultivar CVL-1 contig05654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1533
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29


Found at i:529 original size:18 final size:18

Alignment explanation


    Indices: 499--535  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        489 CCCAACTAAC

                              
        499 AACTAACTAAAGGCCCAA
          1 AACTAACTAAAGGCCCAA

                               
        517 AACTATACT-AAGGCCCAA
          1 AACTA-ACTAAAGGCCCAA

             
        535 A
          1 A

        536 GGGAAACCTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  18   15  0.83
  19    3  0.17

ACGTcount: A:0.49, C:0.27, G:0.11, T:0.14


Consensus pattern (18 bp):   
AACTAACTAAAGGCCCAA
Done.