Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000564.1 Corchorus capsularis cultivar CVL-1 contig00564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28


Found at i:225 original size:21 final size:22

Alignment explanation


    Indices: 177--226  Score: 77
    Period size: 21  Copynumber: 2.4  Consensus size: 22

        167 GCGGCAGAGA

                                  
        177 TATGGGGCCCAAGTTCCACCAT
          1 TATGGGGCCCAAGTTCCACCAT

              *                   
        199 T-CGGGGCCCAAGTTCCACC-T
          1 TATGGGGCCCAAGTTCCACCAT

                    
        219 TATGGGGC
          1 TATGGGGC

        227 TGCCCAACCT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  20    2  0.08
  21   22  0.88
  22    1  0.04

ACGTcount: A:0.18, C:0.32, G:0.28, T:0.22


Consensus pattern (22 bp):   
TATGGGGCCCAAGTTCCACCAT
Done.