Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005642.1 Corchorus capsularis cultivar CVL-1 contig05660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3173

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--177
19
1.9
19
94
5
65
52
5
19
22
1.66
342--434
20
4.9
20
70
21
65
54
5
17
22
1.62
312--557
55
4.5
55
81
8
259
52
6
20
21
1.68
380--446
21
3.2
21
79
8
75
52
2
19
25
1.60
401--488
36
2.5
34
77
15
90
53
3
21
21
1.60
478--539
20
3.1
20
86
4
90
50
6
24
19
1.71
1662--1733
27
2.6
27
86
6
101
22
19
4
54
1.61
1669--1720
26
2.0
27
92
3
88
23
19
3
53
1.61
1669--1733
28
2.4
28
89
5
98
23
20
4
52
1.65
1662--1844
54
3.6
52
73
13
146
22
22
3
51
1.63
1717--1759
19
2.3
18
84
8
50
20
25
4
48
1.69
1652--1739
28
3.2
27
74
7
79
19
20
3
56
1.56
1717--1752
19
1.9
18
88
5
54
19
27
5
47
1.72
1735--1832
27
3.6
26
74
16
76
22
25
3
48
1.64
1756--1854
27
3.6
27
72
1
90
21
23
2
53
1.56
1779--1909
65
2.0
65
86
2
183
19
23
2
54
1.56
1802--1891
37
2.4
37
80
7
101
16
23
2
57
1.50
1839--1911
27
2.7
27
85
10
105
16
23
2
57
1.52
1866--1949
39
2.2
36
83
8
105
14
25
2
58
1.48
2075--2129
20
2.8
19
83
8
74
25
18
3
52
1.61
1925--2335
192
2.1
192
94
0
723
22
17
5
54
1.64
2327--2751
22
19.7
22
74
12
149
21
20
4
53
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2340--2395
21
2.6
22
82
5
69
23
23
3
50
1.65
2373--2423
25
2.1
25
85
7
70
15
19
3
60
1.50
2250--2746
130
3.9
129
95
2
824
21
20
4
52
1.64
2470--2525
21
2.6
22
82
5
69
23
23
3
50
1.65
2496--2556
32
2.0
30
87
6
86
16
19
3
60
1.49
2503--2553
25
2.1
25
85
7
70
15
19
3
60
1.50

Tables:   1

The End!