Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005643.1 Corchorus capsularis cultivar CVL-1 contig05661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8374
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:2310 original size:16 final size:18

Alignment explanation


    Indices: 2278--2311  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2268 ATTTCCTTCT

                              
       2278 CTTGCTCACTGAATTGCC
          1 CTTGCTCACTGAATTGCC

                              
       2296 CTTGCTCA-T-AATTGCC
          1 CTTGCTCACTGAATTGCC

       2312 TTATTGTTGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    7  0.44
  17    1  0.06
  18    8  0.50

ACGTcount: A:0.18, C:0.32, G:0.15, T:0.35


Consensus pattern (18 bp):   
CTTGCTCACTGAATTGCC
Done.