Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005646.1 Corchorus capsularis cultivar CVL-1 contig05664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1781
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31


Found at i:346 original size:5 final size:5

Alignment explanation


    Indices: 338--364  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

        328 TTTTTTCTGT

                                            
        338 CTTTC CTTTC CTTTC CTTTC CTTTC CT
          1 CTTTC CTTTC CTTTC CTTTC CTTTC CT

        365 CCTCTTCTCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59


Consensus pattern (5 bp):   
CTTTC

Done.