Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005650.1 Corchorus capsularis cultivar CVL-1 contig05668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3656
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39


Found at i:3310 original size:20 final size:21

Alignment explanation


    Indices: 3272--3311  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       3262 ATTGTTAAAT

                                 
       3272 TTCATGGTTATATAAGAGAGA
          1 TTCATGGTTATATAAGAGAGA

                                 
       3293 TTCATTGGTT-TA-AAGAGAG
          1 TTCA-TGGTTATATAAGAGAG

       3312 GTAAGTATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    7  0.39
  21    6  0.33
  22    5  0.28

ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35


Consensus pattern (21 bp):   
TTCATGGTTATATAAGAGAGA
Done.