Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005656.1 Corchorus capsularis cultivar CVL-1 contig05674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5226

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2929--2985
9
6.1
9
85
6
78
1
14
0
84
0.71
2930--2987
5
12.2
5
78
14
61
1
15
0
82
0.74
2929--2987
11
5.7
10
79
16
59
1
15
0
83
0.74
2929--2985
16
3.7
15
83
4
69
1
14
0
84
0.71
2929--3024
6
15.8
6
80
13
74
1
20
0
78
0.82
3075--3313
47
5.1
47
88
3
216
30
22
24
22
1.99
3125--3312
94
2.0
94
96
0
349
28
23
26
22
1.99
3422--3782
69
5.3
69
83
6
394
27
17
26
27
1.98
3422--3782
135
2.6
137
83
5
444
27
17
26
27
1.98
4284--4383
50
2.0
50
88
0
146
38
14
14
34
1.85
4678--4719
14
3.0
14
83
10
59
0
21
0
78
0.75
4788--5081
145
2.0
145
98
0
570
32
14
22
29
1.94
5172--5219
20
2.5
20
80
10
55
16
25
0
58
1.38

Tables:   1

The End!