Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005658.1 Corchorus capsularis cultivar CVL-1 contig05676, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13150
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31


Found at i:360 original size:16 final size:16

Alignment explanation


    Indices: 329--367  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        319 GAAAGCAATT

                             
        329 AAACTAAAAATAAATCA
          1 AAACT-AAAATAAATCA

                    *      *
        346 AAACTAAATTAAATCT
          1 AAACTAAAATAAATCA

                  
        362 AAACTA
          1 AAACTA

        368 TACAAATATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  16   15  0.75
  17    5  0.25

ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23


Consensus pattern (16 bp):   
AAACTAAAATAAATCA
Done.