Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005663.1 Corchorus capsularis cultivar CVL-1 contig05681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1949
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26


Found at i:345 original size:15 final size:15

Alignment explanation


    Indices: 325--356  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        315 CCATGGACGA

                           
        325 GACAGATACAGAAAT
          1 GACAGATACAGAAAT

                   *       
        340 GACAGATTCAGAAAT
          1 GACAGATACAGAAAT

              
        355 GA
          1 GA

        357 AGAAGTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.50, C:0.12, G:0.22, T:0.16


Consensus pattern (15 bp):   
GACAGATACAGAAAT
Done.