Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005667.1 Corchorus capsularis cultivar CVL-1 contig05685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4417
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2299 original size:7 final size:7

Alignment explanation


    Indices: 2287--2321  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

       2277 CCTTGCCTTT

                   
       2287 GTGAAAA
          1 GTGAAAA

                   
       2294 GTGAAAA
          1 GTGAAAA

                   
       2301 GTGAAAA
          1 GTGAAAA

                   
       2308 GTGAAAA
          1 GTGAAAA

            *      
       2315 CTGAAAA
          1 GTGAAAA

       2322 ATCCTAGTTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   27  1.00

ACGTcount: A:0.57, C:0.03, G:0.26, T:0.14


Consensus pattern (7 bp):   
GTGAAAA

Done.