Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005677.1 Corchorus capsularis cultivar CVL-1 contig05695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6396
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:787 original size:19 final size:19

Alignment explanation


    Indices: 744--787  Score: 79
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        734 GAAAATAGAT

                 *             
        744 GTAAAAAAAATCATAGCAC
          1 GTAAATAAAATCATAGCAC

                               
        763 GTAAATAAAATCATAGCAC
          1 GTAAATAAAATCATAGCAC

                  
        782 GTAAAT
          1 GTAAAT

        788 TTTGAAGTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  19   24  1.00

ACGTcount: A:0.55, C:0.14, G:0.11, T:0.20


Consensus pattern (19 bp):   
GTAAATAAAATCATAGCAC
Done.