Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005681.1 Corchorus capsularis cultivar CVL-1 contig05699, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2239
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36


Found at i:1158 original size:21 final size:23

Alignment explanation


    Indices: 1113--1182  Score: 67
    Period size: 21  Copynumber: 3.0  Consensus size: 23

       1103 ACTTAAAAAT

                                     
       1113 ATTAGGCTCTTTGAAATTTTTTGTC
          1 ATTAGGCTCTTTGAAA--TTTTGTC

                                   
       1138 ATTAGGCTCTTT-AAA-TTTGTC
          1 ATTAGGCTCTTTGAAATTTTGTC

              *                      
       1159 ATGA-GC-CTATTGAAATTTTTGTC
          1 ATTAGGCTCT-TTGAAA-TTTTGTC

             
       1182 A
          1 A

       1183 AAATACTAGC


Statistics
Matches: 40,  Mismatches: 1, Indels: 10
        0.78            0.02        0.20

Matches are distributed among these distances:
  19    2  0.05
  20    4  0.10
  21   12  0.30
  23    7  0.17
  24    3  0.08
  25   12  0.30

ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47


Consensus pattern (23 bp):   
ATTAGGCTCTTTGAAATTTTGTC
Done.