Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005682.1 Corchorus capsularis cultivar CVL-1 contig05700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12700
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:3238 original size:12 final size:12

Alignment explanation


    Indices: 3221--3245  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       3211 ACCCCTTGAA

                        
       3221 GAAGAGGAATTT
          1 GAAGAGGAATTT

                        
       3233 GAAGAGGAATTT
          1 GAAGAGGAATTT

             
       3245 G
          1 G

       3246 TAAAATCGCG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24


Consensus pattern (12 bp):   
GAAGAGGAATTT
Done.