Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005688.1 Corchorus capsularis cultivar CVL-1 contig05706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5113
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:3324 original size:3 final size:3

Alignment explanation


    Indices: 3318--3347  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       3308 GTGCATCATC

                                                   
       3318 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT

       3348 CTCTCCTTTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
ATT

Found at i:5078 original size:2 final size:2

Alignment explanation


    Indices: 5071--5105  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       5061 CCTAACAAAC

                                     *                          
       5071 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5106 GTTATAAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.