Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005689.1 Corchorus capsularis cultivar CVL-1 contig05707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11802
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35


Found at i:1973 original size:41 final size:41

Alignment explanation


    Indices: 1916--1998  Score: 123
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1906 GTTTAAGATG

                                            *         
       1916 TATGCCAAAGATCTATGC-AGACATATATAATTCTCACTTCT
          1 TATGCCAAAGATCTATGCAAG-CATATATAATCCTCACTTCT

                                      *         *    
       1957 TATGCCAAAGATCTATGCAAGCATATTTAATCCTCATTTCT
          1 TATGCCAAAGATCTATGCAAGCATATATAATCCTCACTTCT

             
       1998 T
          1 T

       1999 GTAAGTTCAA


Statistics
Matches: 38,  Mismatches: 3, Indels: 2
        0.88            0.07        0.05

Matches are distributed among these distances:
  41   36  0.95
  42    2  0.05

ACGTcount: A:0.33, C:0.22, G:0.10, T:0.36


Consensus pattern (41 bp):   
TATGCCAAAGATCTATGCAAGCATATATAATCCTCACTTCT
Done.