Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005693.1 Corchorus capsularis cultivar CVL-1 contig05711, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10690
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:442 original size:2 final size:2

Alignment explanation


    Indices: 435--464  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        425 AAAACCGAAA

                                                        
        435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        465 TCATAGAATT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:2103 original size:26 final size:26

Alignment explanation


    Indices: 2074--2135  Score: 124
    Period size: 26  Copynumber: 2.4  Consensus size: 26

       2064 TGTATTATAA

                                      
       2074 AACTGAAATTCTTAGCAAAATAATAC
          1 AACTGAAATTCTTAGCAAAATAATAC

                                      
       2100 AACTGAAATTCTTAGCAAAATAATAC
          1 AACTGAAATTCTTAGCAAAATAATAC

                      
       2126 AACTGAAATT
          1 AACTGAAATT

       2136 ATATTAATAT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   36  1.00

ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27


Consensus pattern (26 bp):   
AACTGAAATTCTTAGCAAAATAATAC

Done.