Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005699.1 Corchorus capsularis cultivar CVL-1 contig05717, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1468
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31


Found at i:77 original size:49 final size:49

Alignment explanation


    Indices: 1--387  Score: 428
    Period size: 49  Copynumber: 7.9  Consensus size: 49

                                  *                          
          1 TTTTATCTGCTATTTCCCAAAACGCCCTTCCCGGACGGAAGGCACTTGA
          1 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                                                         *  *
         50 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACCTGT
          1 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                                            *         *     *
         99 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCAGACGGAAGGTACTTGT
          1 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                               *                      *     *
        148 TTTTATCTGCTATTTCCCAGAATGCCCTTCCCGGACGGAAGGTACTTGT
          1 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                     *             *       **        *       
        197 TTTTATCTGTTATTTCCCAAAATTCCCTTCCTAGACGGAAGCCACTT-A
          1 TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                **      *     *             *        *      * 
        245 TTTTCGCTTGCTTTTTCCTAAAATGCCCTTCCTGGACGGAAAGCAC-TAA
          1 TTTTATC-TGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                  *           *                  *           * 
        294 TCTTTACCTGCT-TTGTCTCAAAATGCCCTTCCCGGATGGAAGGCAC-TAA
          1 T-TTTATCTGCTATT-TCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

                                     *            *         
        343 TTTT-TACTTG-T-TTTCCCTAAAACGCCCTTCCCGGATGGAAGGCAC
          1 TTTTAT-C-TGCTATTTCCC-AAAATGCCCTTCCCGGACGGAAGGCAC

        388 CATTCTCTTA


Statistics
Matches: 296,  Mismatches: 35, Indels: 15
        0.86            0.10        0.04

Matches are distributed among these distances:
  47    3  0.01
  48   41  0.14
  49  248  0.84
  50    4  0.01

ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33


Consensus pattern (49 bp):   
TTTTATCTGCTATTTCCCAAAATGCCCTTCCCGGACGGAAGGCACTTGA

Done.