Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005700.1 Corchorus capsularis cultivar CVL-1 contig05718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9295
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35


Found at i:435 original size:29 final size:29

Alignment explanation


    Indices: 403--478  Score: 143
    Period size: 29  Copynumber: 2.6  Consensus size: 29

        393 CTTTTTTAAG

                                         
        403 AGTTCAGGGGCTTATTTGGCCGAAATAAT
          1 AGTTCAGGGGCTTATTTGGCCGAAATAAT

                                         
        432 AGTTCAGGGGCTTATTTGGCCGAAATAAT
          1 AGTTCAGGGGCTTATTTGGCCGAAATAAT

                     *        
        461 AGTTCAGGGACTTATTTG
          1 AGTTCAGGGGCTTATTTG

        479 ACGGTTCGGT


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  29   46  1.00

ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33


Consensus pattern (29 bp):   
AGTTCAGGGGCTTATTTGGCCGAAATAAT

Found at i:8888 original size:12 final size:12

Alignment explanation


    Indices: 8871--8900  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       8861 CATCGATACC

                        
       8871 TCGATATATCCA
          1 TCGATATATCCA

                       *
       8883 TCGATATATCCG
          1 TCGATATATCCA

                  
       8895 TCGATA
          1 TCGATA

       8901 CCTGTAATAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33


Consensus pattern (12 bp):   
TCGATATATCCA
Done.