Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005702.1 Corchorus capsularis cultivar CVL-1 contig05720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6124
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:2636 original size:14 final size:15

Alignment explanation


    Indices: 2617--2649  Score: 59
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       2607 AATGGCCAAG

                           
       2617 TTTTGTAACAGAAT-
          1 TTTTGTAACAGAATA

                           
       2631 TTTTGTAACAGAATA
          1 TTTTGTAACAGAATA

                
       2646 TTTT
          1 TTTT

       2650 CCCGATACTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  14   14  0.78
  15    4  0.22

ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48


Consensus pattern (15 bp):   
TTTTGTAACAGAATA
Done.