Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005703.1 Corchorus capsularis cultivar CVL-1 contig05721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2246

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
670--700
16
1.9
16
93
0
53
54
9
0
35
1.33
907--967
32
1.9
32
93
0
104
57
8
3
31
1.44
1078--1108
2
15.5
2
100
0
62
51
0
0
48
1.00
1228--1778
22
25.6
22
67
14
163
35
16
9
38
1.82
1526--1594
23
3.0
23
82
4
86
39
17
7
36
1.77
1534--1619
23
3.7
23
77
9
86
38
13
8
39
1.75
1526--1617
46
2.0
46
82
4
114
38
16
7
38
1.77
1860--1936
22
3.5
23
84
10
81
33
7
7
50
1.60
1884--2112
44
5.2
44
70
13
157
33
14
10
42
1.79
1884--2112
22
10.4
22
70
10
137
33
14
10
42
1.79
2157--2243
24
3.6
25
79
10
83
40
17
6
35
1.76

Tables:   1

The End!