Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000572.1 Corchorus capsularis cultivar CVL-1 contig00572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3674
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:3601 original size:28 final size:29

Alignment explanation


    Indices: 3558--3625  Score: 93
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       3548 CGTTTAGACG

                                          
       3558 TTTTGCCCCCCGAACTTCAA-TCTTGGACA
          1 TTTTG-CCCCCGAACTTCAATTCTTGGACA

                     *           *      *
       3587 TTTTGCCCCTGAACTTCAATTTTTGGACG
          1 TTTTGCCCCCGAACTTCAATTCTTGGACA

                      
       3616 TTTTGCCCCC
          1 TTTTGCCCCC

       3626 TCAACTTAAC


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  28   13  0.38
  29   21  0.62

ACGTcount: A:0.16, C:0.32, G:0.15, T:0.37


Consensus pattern (29 bp):   
TTTTGCCCCCGAACTTCAATTCTTGGACA

Done.