Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005720.1 Corchorus capsularis cultivar CVL-1 contig05738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14851
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:12133 original size:20 final size:20

Alignment explanation


    Indices: 12108--12147  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      12098 TGATTGGAAT

                                
      12108 TTGTTTTGAAGAGTTTAATA
          1 TTGTTTTGAAGAGTTTAATA

                                
      12128 TTGTTTTGAAGAGTTTAATA
          1 TTGTTTTGAAGAGTTTAATA

      12148 AGTTCGATAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50


Consensus pattern (20 bp):   
TTGTTTTGAAGAGTTTAATA

Found at i:14676 original size:2 final size:2

Alignment explanation


    Indices: 14669--14708  Score: 71
    Period size: 2  Copynumber: 19.5  Consensus size: 2

      14659 ATTCTAATTC

                                                                       
      14669 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA T

      14709 TGCAGCCCCC


Statistics
Matches: 37,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2   35  0.95
   3    2  0.05

ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.