Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005728.1 Corchorus capsularis cultivar CVL-1 contig05746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6313

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
491--645
35
4.4
35
87
6
208
36
18
14
29
1.91
641--924
54
5.4
52
82
5
311
29
22
18
30
1.97
611--908
107
2.8
103
85
5
366
29
21
17
30
1.96
998--1599
37
16.3
37
79
6
603
41
15
20
22
1.90
1046--1599
74
7.5
74
88
2
835
41
15
20
22
1.90
4529--4575
22
2.1
22
92
0
76
40
6
6
46
1.55
4529--4571
11
3.9
11
84
0
59
39
6
6
46
1.58
5507--5689
35
5.2
35
89
2
253
36
17
16
30
1.92
5694--5975
53
5.3
54
82
4
331
29
20
19
30
1.97
5694--5975
54
5.3
53
83
4
336
29
20
19
30
1.97
6059--6313
37
6.9
37
84
2
271
41
15
20
23
1.90
6001--6309
111
2.8
111
84
1
377
44
15
19
21
1.87

Tables:   1

The End!