Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005731.1 Corchorus capsularis cultivar CVL-1 contig05749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3616
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:699 original size:33 final size:32

Alignment explanation


    Indices: 662--768  Score: 126
    Period size: 33  Copynumber: 3.2  Consensus size: 32

        652 CGCCAAGCGA

                              *   *           
        662 TGGCCGGTTG-TGGCCGGACATGTCCATGTCGCG
          1 TGGCCGG-TGATGGCCGGGCATCTCCA-GTCGCG

                                             
        695 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCG
          1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG

                     *         *            *
        728 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG

                    
        761 TGGCCGGT
          1 TGGCCGGT

        769 CACTCGCGCT


Statistics
Matches: 66,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  32    2  0.03
  33   63  0.95
  34    1  0.02

ACGTcount: A:0.08, C:0.29, G:0.40, T:0.22


Consensus pattern (32 bp):   
TGGCCGGTGATGGCCGGGCATCTCCAGTCGCG
Done.