Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005732.1 Corchorus capsularis cultivar CVL-1 contig05750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5175

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
421--477
30
1.9
30
88
0
87
33
15
21
29
1.94
1423--1466
2
21.5
2
86
4
61
45
6
0
47
1.29
1495--1560
31
2.1
32
88
5
100
28
21
4
45
1.71
1501--1568
31
2.2
31
86
7
93
32
17
4
45
1.68
1961--2144
22
8.3
22
76
11
160
33
10
18
38
1.85
2180--2571
22
17.6
22
69
13
115
39
10
16
33
1.83
2378--2441
21
2.8
21
81
11
65
43
10
12
32
1.77
2715--2923
104
2.0
105
80
9
239
40
8
15
35
1.78
2608--3236
44
14.5
44
68
14
274
39
9
15
35
1.80
2677--3241
66
8.6
67
67
14
263
39
10
14
35
1.80
2671--3236
22
26.0
21
70
13
238
39
10
15
35
1.80
5134--5162
2
14.5
2
100
0
58
51
0
48
0
1.00

Tables:   1

The End!