Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005740.1 Corchorus capsularis cultivar CVL-1 contig05758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18044

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1041--1701
22
30.6
22
69
14
251
35
15
10
38
1.81
1005--1133
62
2.1
62
98
0
249
34
13
8
43
1.75
1005--1149
62
2.3
62
91
2
202
35
14
8
42
1.76
1408--1489
43
1.9
43
92
0
137
37
15
6
40
1.73
1783--1910
22
5.8
22
75
6
89
34
14
10
41
1.79
1783--1927
44
3.3
44
76
9
152
33
13
10
42
1.78
3155--3194
2
20.5
2
89
5
64
50
0
2
47
1.14
4602--4636
2
17.5
2
100
0
70
51
0
0
48
1.00
8668--8746
40
2.0
38
90
4
122
20
0
17
62
1.34
8693--8742
17
3.3
15
79
15
59
18
0
18
64
1.30
9245--9284
2
19.5
2
94
5
71
50
2
0
47
1.14
9813--9841
14
2.0
15
93
6
51
55
13
17
13
1.70
10082--10116
17
2.1
17
100
0
70
22
11
11
54
1.68
12255--12350
48
2.0
48
100
0
192
22
10
29
37
1.88
14774--14827
6
8.8
6
80
15
58
81
3
12
1
0.91
17167--17288
26
4.7
26
79
8
140
14
14
41
28
1.86
17167--17288
53
2.3
52
87
4
183
14
14
41
28
1.86
17245--17287
13
3.3
13
76
23
54
13
13
48
23
1.79
17328--17460
23
5.7
23
90
1
176
14
16
39
29
1.88
17361--17580
108
2.0
109
93
0
379
15
16
36
30
1.90
17470--17536
23
2.9
23
93
0
107
13
17
38
29
1.88
17988--18023
19
1.9
19
88
5
56
13
5
11
69
1.34

Tables:   1

The End!