Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005741.1 Corchorus capsularis cultivar CVL-1 contig05759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12301

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1330--1368
19
2.1
19
95
0
69
15
15
17
51
1.77
1368--1404
2
19.0
2
94
5
67
48
0
0
51
1.00
2371--2438
31
2.2
32
80
17
83
42
0
2
54
1.15
2510--2586
32
2.4
32
73
0
82
25
18
20
35
1.95
4862--4988
33
3.9
33
82
6
127
16
39
32
11
1.85
5279--5315
15
2.5
15
80
20
51
48
0
0
51
1.00
5309--5348
9
4.6
9
81
6
55
67
0
0
32
0.91
5419--5453
18
1.9
18
88
11
54
77
0
20
2
0.90
7670--7767
32
3.0
33
70
8
92
14
36
34
14
1.86
7771--7838
25
2.7
25
95
0
127
38
4
4
52
1.41
10777--10810
3
11.7
3
93
6
61
70
0
29
0
0.87
10775--10819
15
3.3
14
88
11
67
75
0
24
0
0.80
11300--11335
12
2.8
13
87
8
56
30
8
27
33
1.86
11288--11335
25
2.0
24
84
12
62
29
10
29
31
1.90
11685--11756
3
24.3
3
76
16
62
31
0
0
68
0.90
11684--11756
25
2.9
25
76
11
69
31
0
0
68
0.90

Tables:   1

The End!