Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005743.1 Corchorus capsularis cultivar CVL-1 contig05761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8837
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Found at i:8789 original size:2 final size:2

Alignment explanation


    Indices: 8782--8822  Score: 68
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       8772 TGAAAGCTAC

                                                                          
       8782 TA TA TA TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

             
       8822 T
          1 T

       8823 TAACTAAAAC


Statistics
Matches: 37,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    2  0.05
   2   35  0.95

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (2 bp):   
TA

Done.