Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005746.1 Corchorus capsularis cultivar CVL-1 contig05764, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22691

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--43
21
2.0
22
86
9
61
20
16
23
39
1.92
1--197
88
2.2
87
86
6
272
22
16
19
41
1.90
115--261
66
2.3
66
92
2
244
23
15
19
41
1.89
175--361
87
2.1
88
82
2
234
25
14
19
40
1.90
21--312
153
1.9
154
86
4
421
25
16
18
40
1.91
337--398
22
2.9
21
69
4
61
22
11
25
40
1.87
2206--2242
19
1.9
19
94
0
65
16
24
2
56
1.53
3907--3951
21
2.1
21
87
0
63
42
0
0
57
0.98
4563--4736
82
2.1
82
95
2
312
22
27
23
26
1.99
5936--5973
11
3.5
11
85
10
51
57
2
0
39
1.12
6370--6396
2
13.5
2
100
0
54
51
0
0
48
1.00
7498--7830
178
1.9
178
83
6
442
34
13
16
35
1.88
14419--14447
2
14.5
2
100
0
58
48
0
0
51
1.00
16738--17184
168
2.7
166
85
4
587
40
15
14
29
1.87
17244--17293
2
25.5
2
81
18
61
52
0
4
44
1.20
17244--17293
23
2.0
26
85
11
70
52
0
4
44
1.20
21224--21277
28
1.9
28
100
0
108
44
7
7
40
1.60
22584--22651
35
2.0
34
85
8
93
51
11
5
30
1.62

Tables:   1

The End!