Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005748.1 Corchorus capsularis cultivar CVL-1 contig05766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3824

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70--121
16
3.3
16
69
15
54
32
13
15
38
1.86
1--1462
57
25.6
57
79
15
963
28
15
22
33
1.95
12--1478
88
17.5
85
79
14
1007
28
15
22
33
1.95
346--429
16
5.5
15
68
14
55
29
14
20
35
1.92
44--1478
56
25.8
52
80
13
772
28
15
21
33
1.95
12--1291
26
45.3
28
81
13
1069
28
15
22
33
1.95
1299--1478
26
6.7
27
83
12
219
27
16
21
34
1.95
1174--1416
125
1.9
123
84
8
321
25
15
23
34
1.94
12--1478
636
2.3
610
81
13
1597
28
15
22
33
1.95
1300--1478
82
2.2
81
90
4
272
27
16
21
34
1.95
2152--3824
643
2.6
646
85
3
2082
34
16
14
34
1.90
2050--3824
322
5.5
322
84
5
2008
34
16
14
34
1.89

Tables:   1

The End!