Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005758.1 Corchorus capsularis cultivar CVL-1 contig05776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1699
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--41  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

                                                                         
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         42 TTACTAGTAA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:1527 original size:21 final size:22

Alignment explanation


    Indices: 1482--1529  Score: 71
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1472 ATAATGTCCA

                     *            
       1482 TAGCAAATGTAAATAAAGCTCG
          1 TAGCAAATGCAAATAAAGCTCG

                                * 
       1504 TAGCAAATGCAAAT-AAGCTTG
          1 TAGCAAATGCAAATAAAGCTCG

                 
       1525 TAGCA
          1 TAGCA

       1530 TATAGGAATA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  21   11  0.46
  22   13  0.54

ACGTcount: A:0.44, C:0.15, G:0.19, T:0.23


Consensus pattern (22 bp):   
TAGCAAATGCAAATAAAGCTCG
Done.