Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005761.1 Corchorus capsularis cultivar CVL-1 contig05779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23982

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1202--1865
198
3.4
197
83
2
850
34
18
14
32
1.90
1704--2033
168
2.0
164
86
5
466
32
20
16
31
1.94
3333--3390
22
2.7
21
78
5
71
32
6
10
50
1.63
3505--3545
20
2.1
19
86
9
55
41
0
7
51
1.30
10607--10783
87
2.0
86
93
3
302
56
10
18
14
1.66
11670--11702
5
6.6
5
100
0
66
78
0
21
0
0.75
13385--13413
13
2.2
13
100
0
58
20
13
31
34
1.92
13726--13751
10
2.6
10
100
0
52
38
23
7
30
1.83
15996--16031
18
2.0
18
100
0
72
33
16
11
38
1.84
21464--21494
16
1.9
16
100
0
62
48
0
12
38
1.42
23044--23093
14
3.5
14
72
5
55
44
0
8
48
1.32
23359--23399
20
2.0
20
85
4
55
46
7
2
43
1.44
23904--23960
21
2.6
22
81
10
64
47
7
10
35
1.65
23905--23952
23
2.1
23
88
3
71
54
6
8
31
1.55

Tables:   1

The End!