Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005765.1 Corchorus capsularis cultivar CVL-1 contig05783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2088
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:1647 original size:13 final size:13

Alignment explanation


    Indices: 1624--1662  Score: 62
    Period size: 13  Copynumber: 3.1  Consensus size: 13

       1614 GTTATGCGCG

                         
       1624 GACAA-CACCCAT
          1 GACAAGCACCCAT

                         
       1636 GACAAGCACCCAT
          1 GACAAGCACCCAT

             *           
       1649 GCCAAGCACCCAT
          1 GACAAGCACCCAT

             
       1662 G
          1 G

       1663 CCATGCCGAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  12    5  0.20
  13   20  0.80

ACGTcount: A:0.36, C:0.41, G:0.15, T:0.08


Consensus pattern (13 bp):   
GACAAGCACCCAT

Found at i:1663 original size:13 final size:13

Alignment explanation


    Indices: 1629--1665  Score: 65
    Period size: 13  Copynumber: 2.8  Consensus size: 13

       1619 GCGCGGACAA

                    *    
       1629 CACCCATGACAAG
          1 CACCCATGCCAAG

                         
       1642 CACCCATGCCAAG
          1 CACCCATGCCAAG

                       
       1655 CACCCATGCCA
          1 CACCCATGCCA

       1666 TGCCGATGTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  13   23  1.00

ACGTcount: A:0.32, C:0.46, G:0.14, T:0.08


Consensus pattern (13 bp):   
CACCCATGCCAAG
Done.