Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005767.1 Corchorus capsularis cultivar CVL-1 contig05785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3340
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40


Found at i:1539 original size:2 final size:2

Alignment explanation


    Indices: 1534--1572  Score: 53
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       1524 TGTGTGTGTG

                                        *        *                     
       1534 TA TA TA TA TA TA TA TA TA TC TA TA TC TA TA TA T- TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1573 AGTCTAAACT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:1894 original size:3 final size:3

Alignment explanation


    Indices: 1888--1933  Score: 92
    Period size: 3  Copynumber: 15.3  Consensus size: 3

       1878 TAGAATCAAA

                                                                         
       1888 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A

       1934 AATTAGAAGT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   43  1.00

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (3 bp):   
ATT

Done.