Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005772.1 Corchorus capsularis cultivar CVL-1 contig05790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1813
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33


Found at i:1435 original size:21 final size:22

Alignment explanation


    Indices: 1390--1438  Score: 59
    Period size: 21  Copynumber: 2.3  Consensus size: 22

       1380 TAAAATTGGT

                                 *
       1390 AATCA-AGAGTTTTCAAGATTT
          1 AATCAGAGAGTTTTCAAGATTA

                                   
       1411 AATCAGAG-GTTTTCAA-ATTCA
          1 AATCAGAGAGTTTTCAAGATT-A

                   
       1432 AATCAGA
          1 AATCAGA

       1439 CTTATTTAGA


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  20    3  0.12
  21   20  0.80
  22    2  0.08

ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33


Consensus pattern (22 bp):   
AATCAGAGAGTTTTCAAGATTA
Done.