Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005775.1 Corchorus capsularis cultivar CVL-1 contig05793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17453

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1231--1314
10
7.7
10
71
16
60
15
50
22
11
1.77
1207--1277
33
2.2
33
97
0
133
15
46
23
14
1.82
1241--1300
23
2.6
23
97
0
111
16
50
20
13
1.78
6820--6861
21
2.1
19
86
8
57
38
7
19
35
1.79
7023--7098
22
3.5
22
75
10
75
39
6
14
39
1.72
7057--7127
22
3.3
21
79
11
65
46
5
15
32
1.69
7012--7110
44
2.2
44
78
8
103
43
6
12
38
1.67
7139--7210
22
3.3
22
71
13
58
44
15
6
33
1.73
7149--7208
22
2.7
22
82
5
68
40
13
8
38
1.75
7294--7529
22
10.8
22
74
6
167
33
15
13
37
1.87
7254--7467
44
4.9
44
77
9
165
33
16
12
38
1.86
7361--7531
65
2.6
64
82
7
184
32
16
14
36
1.89
7683--7767
44
1.9
44
86
9
120
37
16
8
37
1.79
7684--7785
22
4.6
22
74
13
93
39
14
8
37
1.78
8180--8827
22
30.0
21
69
12
278
34
15
10
38
1.83
8180--8593
22
18.8
22
75
6
329
34
16
10
38
1.83
8518--8672
78
2.0
77
83
3
195
33
19
11
35
1.88
8498--8690
100
1.9
99
82
7
239
34
17
11
36
1.86
10574--10697
22
5.7
22
74
5
101
41
14
8
35
1.77
10582--10677
21
4.5
22
75
8
81
39
16
9
34
1.81
10582--10699
43
2.7
44
81
3
125
41
15
8
34
1.77
15524--15554
3
10.3
3
100
0
62
64
0
0
35
0.94

Tables:   1

The End!