Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000578.1 Corchorus capsularis cultivar CVL-1 contig00578, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8209
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:6421 original size:21 final size:21

Alignment explanation


    Indices: 6368--6427  Score: 75
    Period size: 21  Copynumber: 2.9  Consensus size: 21

       6358 TTTTGAGCAA

                                *
       6368 GAATATTCCAATCGATTCTAT
          1 GAATATTCCAATCGATTCTAG

             **  * *             
       6389 GTCTACTACAATCGATTCTAG
          1 GAATATTCCAATCGATTCTAG

                              
       6410 GAATATTCCAATCGATTC
          1 GAATATTCCAATCGATTC

       6428 CAAGTTATGC


Statistics
Matches: 30,  Mismatches: 9, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35


Consensus pattern (21 bp):   
GAATATTCCAATCGATTCTAG
Done.