Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005780.1 Corchorus capsularis cultivar CVL-1 contig05798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3777

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993--1300
14
22.3
14
71
21
147
30
24
2
42
1.68
998--1259
8
34.9
8
68
24
80
29
23
3
44
1.68
1135--1286
40
3.7
40
76
15
114
30
25
1
42
1.66
993--1162
22
7.9
22
78
13
183
28
23
2
44
1.68
1245--1301
29
2.0
28
82
3
69
35
26
1
36
1.67
1339--1394
17
3.4
17
80
14
55
32
19
3
44
1.68
1411--1467
16
3.7
15
77
11
62
29
24
5
40
1.77
1422--1464
14
2.9
14
77
12
50
30
23
6
39
1.81
1336--1505
80
2.1
81
88
1
261
27
21
8
42
1.82
1436--1580
58
2.5
58
90
2
229
26
21
9
42
1.84
1547--1595
8
6.1
8
78
0
53
28
22
4
44
1.71
1549--1604
24
2.3
24
90
0
85
28
25
5
41
1.77
1574--1604
16
1.9
16
93
0
53
29
25
3
41
1.71
1619--1652
14
2.4
14
90
0
50
29
23
2
44
1.68
1712--1746
13
2.6
13
95
4
61
28
17
5
48
1.69
2565--2604
14
2.9
14
96
0
71
77
0
22
0
0.77
2561--2605
6
6.8
6
81
18
54
77
0
22
0
0.76
2561--2603
20
2.1
20
87
12
61
79
0
20
0
0.74

Tables:   1

The End!