Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005786.1 Corchorus capsularis cultivar CVL-1 contig05804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5024
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33


Found at i:2437 original size:19 final size:20

Alignment explanation


    Indices: 2413--2465  Score: 53
    Period size: 19  Copynumber: 2.9  Consensus size: 20

       2403 TAAATAAATA

                                
       2413 AAAAATAATAAAAATTAT-T
          1 AAAAATAATAAAAATTATAT

                                 
       2432 AAAAAT--T-AAAATTAATAT
          1 AAAAATAATAAAAATT-ATAT

            *                
       2450 TAAAATAA-AAAAATTA
          1 AAAAATAATAAAAATTA

       2466 CATCCCCTAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 10
        0.72            0.03        0.26

Matches are distributed among these distances:
  16    6  0.21
  17    3  0.11
  18    6  0.21
  19    7  0.25
  20    6  0.21

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (20 bp):   
AAAAATAATAAAAATTATAT
Done.