Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005787.1 Corchorus capsularis cultivar CVL-1 contig05805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4002
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Found at i:3658 original size:24 final size:25

Alignment explanation


    Indices: 3619--3671  Score: 81
    Period size: 24  Copynumber: 2.2  Consensus size: 25

       3609 TAAAAAGAAG

                                     
       3619 ACATGTTAATAATAATCATACCGAT
          1 ACATGTTAATAATAATCATACCGAT

                    *           *    
       3644 ACATGTT-TTAATAATCATATCGAT
          1 ACATGTTAATAATAATCATACCGAT

                
       3668 ACAT
          1 ACAT

       3672 TAGTTGAATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  24   19  0.73
  25    7  0.27

ACGTcount: A:0.42, C:0.15, G:0.08, T:0.36


Consensus pattern (25 bp):   
ACATGTTAATAATAATCATACCGAT
Done.