genome.fa.s5793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005793.1 Corchorus capsularis cultivar CVL-1 contig05811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4166

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244--296	12	4.6	12	84	11	58	75	0	24	0	0.80
245--286	6	6.8	6	86	13	59	80	0	19	0	0.70
236--300	31	2.1	31	88	2	94	73	0	24	1	0.91
568--643	36	2.1	36	95	0	134	30	13	14	42	1.84
595--699	50	2.1	50	85	3	140	35	13	12	39	1.82
1139--1281	58	2.5	58	92	0	241	25	20	10	42	1.84
1251--1314	32	2.0	32	90	0	101	21	26	14	37	1.92
1193--1372	90	2.0	91	85	1	245	23	22	12	41	1.87
1277--1387	58	1.9	57	85	8	154	24	20	12	42	1.87
1367--1419	14	3.9	14	80	9	65	35	20	1	41	1.64
1399--1448	20	2.6	19	81	6	64	34	26	2	38	1.68
1375--1442	26	2.5	26	83	9	84	33	23	1	41	1.64
1463--1553	15	6.0	16	65	21	61	28	20	5	45	1.74
1355--1748	8	52.0	8	67	25	84	31	23	3	41	1.70
1486--1657	66	2.6	67	79	13	203	33	23	2	41	1.67
1511--1571	14	4.1	14	78	12	59	32	19	3	44	1.67
1561--1626	20	3.5	18	78	13	62	36	24	1	37	1.65
1561--1589	12	2.4	12	100	0	58	48	17	0	34	1.47
1366--1639	60	4.6	60	69	23	227	32	23	3	40	1.71
1355--1845	178	2.7	178	90	7	714	31	22	3	41	1.71
1641--1874	14	15.9	16	66	20	61	30	22	3	43	1.70
1362--1684	60	5.4	58	72	18	211	32	23	3	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1585--1737	80	1.9	79	84	5	200	30	24	3	42	1.70
1664--1755	36	2.6	35	87	1	130	32	22	1	43	1.61
1694--1859	50	3.1	50	82	9	143	31	22	2	43	1.66
1722--1774	14	3.8	14	82	9	63	33	22	0	43	1.54
1736--1925	59	3.2	59	93	2	303	29	23	4	43	1.72
1967--2281	8	42.0	8	62	19	56	29	23	5	41	1.77
1969--2024	24	2.3	24	87	0	76	28	26	5	39	1.78
2019--2080	29	2.2	29	82	2	72	29	22	4	43	1.74
2039--2100	22	2.9	22	80	2	72	29	22	3	45	1.68
2102--2229	36	3.5	36	81	10	161	29	24	5	40	1.77
2046--2358	22	13.7	23	67	20	99	29	22	5	42	1.77
2871--2901	13	2.4	13	94	0	53	38	9	6	45	1.63

Tables:   1

The End!