Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005804.1 Corchorus capsularis cultivar CVL-1 contig05822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2245
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36


Found at i:1641 original size:10 final size:10

Alignment explanation


    Indices: 1626--1650  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1616 GTTCCTGCAC

                      
       1626 AATTCCAGAA
          1 AATTCCAGAA

                      
       1636 AATTCCAGAA
          1 AATTCCAGAA

                 
       1646 AATTC
          1 AATTC

       1651 TAGAGTCCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24


Consensus pattern (10 bp):   
AATTCCAGAA
Done.