Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005809.1 Corchorus capsularis cultivar CVL-1 contig05827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4870

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1045--1298
111
2.3
110
90
0
391
44
11
20
24
1.83
1259--1284
8
3.2
8
100
0
52
53
11
11
23
1.69
1045--1298
55
4.6
55
91
1
391
44
11
20
24
1.83
1466--1655
7
26.6
7
65
16
59
56
1
22
20
1.51
1440--1512
35
2.1
35
84
5
94
54
2
23
19
1.56
1440--1687
86
2.9
86
93
2
410
55
2
22
19
1.53
1486--1598
35
3.2
35
83
5
111
54
1
23
20
1.53
1673--1729
22
2.6
22
80
5
71
52
5
22
19
1.66
1733--1966
22
11.2
22
70
17
115
53
5
18
21
1.65
1738--1802
14
4.5
14
75
19
53
58
4
15
21
1.55
1806--1902
21
4.5
21
84
2
113
50
7
20
21
1.72
1880--2078
59
3.5
59
75
14
227
54
5
19
21
1.63
1946--1986
14
2.9
15
82
10
50
56
2
17
24
1.53
2030--2069
16
2.6
16
96
4
73
57
5
17
20
1.58
1982--2090
15
7.3
15
76
11
73
54
6
17
22
1.65
1961--2078
60
2.0
60
85
3
159
55
5
17
22
1.62
2057--2090
14
2.3
15
90
5
52
55
5
14
23
1.61
2072--2114
21
2.1
20
86
4
59
53
9
20
16
1.70
2072--2174
42
2.5
41
77
4
116
50
7
21
20
1.73
2081--2174
21
4.5
21
75
16
79
48
8
21
21
1.76
2236--2282
13
3.5
13
72
16
51
61
0
25
12
1.31
2207--2289
27
3.0
28
82
8
100
62
0
21
15
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2212--2298
28
3.1
27
80
11
97
62
0
21
16
1.33
4345--4421
27
2.9
27
94
0
127
15
19
24
40
1.90
4553--4596
21
2.1
21
83
8
54
22
9
13
54
1.67

Tables:   1

The End!