Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000581.1 Corchorus capsularis cultivar CVL-1 contig00581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:196 original size:5 final size:5

Alignment explanation


    Indices: 179--208  Score: 51
    Period size: 5  Copynumber: 5.8  Consensus size: 5

        169 GTTATATCGA

                                               
        179 AAAAT ATAAAT AAAAT AAAAT AAAAT AAAA
          1 AAAAT A-AAAT AAAAT AAAAT AAAAT AAAA

        209 AAATTTTTCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5   19  0.79
   6    5  0.21

ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20


Consensus pattern (5 bp):   
AAAAT

Done.